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External ID PHF10
Ensembl ID ENSG00000130024.4
Start 169860513
End 169880493
-1 PHD finger protein 10 isoform a; PHD zinc finger protein XAP135. [Source:RefSeq;Acc:NM_018288]
LocusLink Summary This gene contains a predicted ORF that encodes a protein with two zinc finger domains. The function of the encoded protein is not known. Sequence analysis suggests that multiple alternatively spliced transcript variants are derived from this gene but the full-length nature of only two of them is known. These two splice variants encode different isoforms. A pseudogene for this gene is located on Xq28
OMIM
   
Genome View in Gbrowse PHF10
 
 
Gene with RefSeq(s) Refseq
Results
Antisense?
Locuslink (Gene) 55274

NM_018288
This variant (1) encodes the longer isoform

Antihunter
Locuslink (Gene) 55274

NM_133325
This variant (2) uses an alternate splice junction which results in 6 fewer nt when compared to variant 1. It encodes an isoform (b) that lacks 2 internal amino acids compared to isoform a

Antihunter
Locuslink (Gene) 55274

NM_018288
This variant (1) encodes the longer isoform

Antihunter
Locuslink (Gene) 55274

NM_133325
This variant (2) uses an alternate splice junction which results in 6 fewer nt when compared to variant 1. It encodes an isoform (b) that lacks 2 internal amino acids compared to isoform a

Antihunter
   
   
   
   
Other cDNA (No refseq) Emblid
  AK001837
 
  BC020954
 
  AF338735
 
  AK001837
 
  BC020954
 
  AF338735
 
  BC020954
 
           
           
 
Ensemble Mouse ID
External Mouse ID
Chromosome
% identity
Sequences
Results
Antisense?
ENSMUSG00000023883.1 Phf10 17 97
Spidey
Antihunter
             
Cgap gene info 435933  
Top Ten All
Tissue Mormalized expr. Cluster clones : tissue clones
Embryonic Stem cells 7.48 3.388888889
Heart 7.11 7:35504
Kidney 6.01 19:113979
Brain 5.98 53:319574
Lymph_Node 5.70 18:113869
Soft_Tissue 5.31 4.758333333
Muscle 5.16 13:90826
mixed 4.24 37:314320
Vascular 3.82 2:18887
Placenta 3.79 15:142648
Embryonic Stem cells 7.48 3.388888889
Heart 7.11 7:35504
Kidney 6.01 19:113979
Brain 5.98 53:319574
Lymph_Node 5.70 18:113869
Soft_Tissue 5.31 4.758333333
Muscle 5.16 13:90826
mixed 4.24 37:314320
Vascular 3.82 2:18887
Placenta 3.79 15:142648
     
Tissue Development Stage Pathology
cervix 31 years adenocarcinoma
cartilage adult chondrosarcoma
lung adult null
cerebellum adult normal
spleen 20 weeks normal
liver 20 weeks normal
urinary null carcinoma
heart 19 weeks normal
placenta null normal
lymph node null lymphoma
null null tumour
prostate null adenocarcinoma
uterus null adenocarcinoma
lung fetus normal
testis fetus normal
uterus adult normal
kidney null normal
liver fetus null
null null neuroblastoma
liver 49 years normal
null null null
kidney null carcinoma
macula lutea adult normal
fovea centralis adult normal
kidney null null
bone adult chondrosarcoma
uterus adult null
whole body 8 weeks normal
brain fetus normal
heart fetus normal
heart adult normal
uterus fetus normal
skin fetus normal
skin adult normal
testis null normal
thyroid adult normal
prostate adult tumour
germinal center null normal
skin null normal
colon null tumour
islets of Langerhans adult normal
brain null null
lung null carcinoma
lung null carcinoid
brain adult glioma
brain adult meningioma
brain adult astrocytoma
brain adult glioblastoma
uterus adult carcinoma
null adult null
skeletal muscle adult normal
     
 
  Ontology Annotation Evidence Source
NM_018288 Molecular Function DNA binding IEA GOA
NM_018288 Biological Process Regulation of transcription, DNA-dependent IEA GOA
NM_133325 Molecular Function DNA binding IEA GOA
NM_133325 Biological Process Regulation of transcription, DNA-dependent IEA GOA
       
Antisense?
Mouse
antisense ?
Omim
Differential Expr.
EST contig

Osservations