SPLICY
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Perl Modules source code:
AffyDB.pm
Documentation (html)

Probeset.pm
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SPLICY - VERSION 1.2

Get original data relatives to single probes mapping over Exons. Probes mapping data supplied by Viviane Praz (ISREC Institute).

  • Probes Maps: retrive maps* and annotation starting from probesets (1007_s_at), Affymetrix® public_id 'design' target (U48705), RefSeq putative targets (NM_001954), gene names (DDR1)
  • TAB Files: Batch Perl script used to generate Annotation Lists (TAB separeted format)
  • Source code and documentation: use modules and objects in your Perl scripts!
  • STATISTICS: Number of probesets/GeneChip®, current version of the Affymetrix® Annotation Tables, Probes Mapping, ecc...
  • HELP: user guide, help, ecc...

*Maps your data!
Generate images with Bio::Graphics libraries.
Visualize exact position of Probe Pairs over the target sequence. Potential 'diagnostic' Probe Pairs as RED triangles. You can also send custom Tracks to the UCSC Genome Browser.
More information and user guide at the help page An image generated with AffyDev software
AUTHORS: Davide Rambaldi (IFOM), Alessandro Guffanti (IFOM), Viviane Praz (ISREC)

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